EBImage
"EBImage" is an R package designed for reading, writing, processing, and analyzing images, with a particular focus on applications within microscopy-based cellular assays. It provides a suite of tools that enable users to perform cell segmentation and extract quantitative cellular descriptors, facilitating the automation of these complex tasks within the R programming environment.
The strength of EBImage lies in its integration with the broader R ecosystem, allowing researchers to leverage a wide array of signal processing, statistical modeling, machine learning, and data visualization tools available in R. This integration significantly enhances the capacity for advanced image analysis and interpretation, particularly in the context of biological and medical research where cellular analysis is crucial.
Topic
Biological imaging
Detail
Operation: Image analysis
Software interface: Command-line user interface,Library
Language: R
License: GNU Lesser General Public License, version 2.1
Cost: Free
Version name: 4.44.0
Credit: CancerPathways project (EU FP7), Human Frontier Sciences Program.
Input: Image
Output: -
Contact: Andrzej Oleś andrzej.oles@gmail.com
Collection: -
Maturity: Stable
Publications
- EBImage--an R package for image processing with applications to cellular phenotypes.
- Pau G, et al. EBImage--an R package for image processing with applications to cellular phenotypes. EBImage--an R package for image processing with applications to cellular phenotypes. 2010; 26:979-81. doi: 10.1093/bioinformatics/btq046
- https://doi.org/10.1093/bioinformatics/btq046
- PMID: 20338898
- PMC: PMC2844988
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/EBImage_4.44.0.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/EBImage/man/EBImage.pdf
Home page: http://bioconductor.org/packages/EBImage/
< Back to DB search