EBImage

"EBImage" is an R package designed for reading, writing, processing, and analyzing images, with a particular focus on applications within microscopy-based cellular assays. It provides a suite of tools that enable users to perform cell segmentation and extract quantitative cellular descriptors, facilitating the automation of these complex tasks within the R programming environment.

The strength of EBImage lies in its integration with the broader R ecosystem, allowing researchers to leverage a wide array of signal processing, statistical modeling, machine learning, and data visualization tools available in R. This integration significantly enhances the capacity for advanced image analysis and interpretation, particularly in the context of biological and medical research where cellular analysis is crucial.

Topic

Biological imaging

Detail

  • Operation: Image analysis

  • Software interface: Command-line user interface,Library

  • Language: R

  • License: GNU Lesser General Public License, version 2.1

  • Cost: Free

  • Version name: 4.44.0

  • Credit: CancerPathways project (EU FP7), Human Frontier Sciences Program.

  • Input: Image

  • Output: -

  • Contact: Andrzej Oleś andrzej.oles@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • EBImage--an R package for image processing with applications to cellular phenotypes.
  • Pau G, et al. EBImage--an R package for image processing with applications to cellular phenotypes. EBImage--an R package for image processing with applications to cellular phenotypes. 2010; 26:979-81. doi: 10.1093/bioinformatics/btq046
  • https://doi.org/10.1093/bioinformatics/btq046
  • PMID: 20338898
  • PMC: PMC2844988

Download and documentation


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