EaSeq
EaSeq is a tool for bioinformaticians and experimentalists alike, that provides a comprehensive and fast means for chromatin immunoprecipitation sequencing (ChIP-seq) data analyses. The software was designed with an integrated computational environment that combines the exploratory power of genome browsers with an extensive set of interactive and user-friendly tools for genome-wide abstraction and visualization. This allows for a seamless experience for the user, providing them with a comprehensive and user-friendly platform that allows them to easily extract information and generate hypotheses from their own data and public genome-wide datasets.
One of the features of EaSeq is the software's ability to increase the throughput of many analysis workflows. This means that bioinformaticians and experimentalists can analyze data at a much faster pace, enabling them to generate insights and hypotheses at a quicker rate. This feature alone can have a profound impact on research in the field of bioinformatics, as it can help researchers to make more rapid progress in their research projects.
Another key feature of EaSeq is its ability to facilitate transparency and reproducibility by organizing analyses. This is particularly important in the field of bioinformatics, where analyses can often be complex and challenging to replicate. By automatically documenting and organizing analyses, EaSeq makes it much easier for researchers to reproduce their analyses and results, making research more reliable and trustworthy.
Topic
ChIP-seq
Detail
Operation: Peak calling;Visualisation;Regression analysis;Genome visualisation;Gene-set enrichment analysis;Genome comparison;Clustering;Filtering;Sequencing quality control;Read summarisation;Formatting
Software interface: Graphical user interface
Language: -
License: -
Cost: Free
Version name: -
Credit: -
Input: -
Output: -
Contact: mads.lerdrup@bric.ku.dk
Collection: -
Maturity: -
Publications
- An interactive environment for agile analysis and visualization of ChIP-sequencing data.
- Lerdrup M, et al. An interactive environment for agile analysis and visualization of ChIP-sequencing data. An interactive environment for agile analysis and visualization of ChIP-sequencing data. 2016; 23:349-57. doi: 10.1038/nsmb.3180
- https://doi.org/10.1038/nsmb.3180
- PMID: 26926434
- PMC: -
Download and documentation
Source: https://easeq.net/downloadeaseq/
Home page: http://easeq.net
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