ExploreModelMatrix
The software tool "ExploreModelMatrix" is an R/Bioconductor package designed to facilitate the use of linear and generalized linear models by providing users with an interactive exploration of model matrices. These matrices are crucial for specifying design and contrast matrices, forming the basis for scientific research hypothesis testing. ExploreModelMatrix aims to enhance users' understanding of individual coefficients in these matrices, helping to reduce the uncertainty associated with model specification. By providing an interactive interface, this tool supports users in navigating and comprehending the intricacies of model matrices, contributing to improved model interpretation and hypothesis formulation.
Topic
Experimental design and studies;RNA-Seq;Microarray experiment;Genotype and phenotype;Gene expression
Detail
Operation: Regression analysis;Genotyping;Visualisation
Software interface: Library
Language: R
License: The MIT License
Cost: Free
Version name: 1.14.0
Credit: The German Federal Ministry of Education and Research, National Institutes of Health (NIH).
Input: -
Output: -
Contact: Charlotte Soneson charlottesoneson@gmail.com
Collection: -
Maturity: Stable
Publications
- ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R.
- Soneson C, et al. ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R. ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R. 2020; 9:512. doi: 10.12688/f1000research.24187.2
- https://doi.org/10.12688/F1000RESEARCH.24187.1
- PMID: 32704355
- PMC: PMC7359746
Download and documentation
Source: http://www.bioconductor.org/packages/src/contrib/ExploreModelMatrix_1.14.0.tar.gz
Documentation: http://www.bioconductor.org/packages/manuals/ExploreModelMatrix/man/ExploreModelMatrix.pdf
Home page: http://www.bioconductor.org/packages/ExploreModelMatrix/
Links: http://www.bioconductor.org/packages/vignettes/ExploreModelMatrix/inst/doc/ExploreModelMatrix.html
Links: http://www.bioconductor.org/packages/vignettes/ExploreModelMatrix/inst/doc/ExploreModelMatrix.R
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