FSuite
FSuite is a pipeline that utilizes inbreeding information derived from human genomic data, which can make use of single nucleotide polymorphism chip or exome data. It includes a module to detect inbred individuals, estimate their inbreeding coefficient, and describe the proportion of different mating types in the population. Additionally, it allows the identification of shared regions of homozygosity between affected individuals (homozygosity mapping) that can be used to identify rare recessive mutations involved in monogenic or multifactorial diseases.
Topic
ChIP-seq;DNA polymorphism;Genetics;Population genetics
Detail
Operation: Genetic variation analysis
Software interface: Command-line user interface
Language: R
License: GNU General Public License
Cost: Free
Version name: 1.0.4
Credit: The plateforme de génomique constitutionnelle (Faculté de médecine, Université Paris-Diderot, Paris, France
Input: -
Output: -
Contact: fsuite.software@gmail.com
Collection: -
Maturity: Stable
Publications
- FSuite: exploiting inbreeding in dense SNP chip and exome data.
- Gazal S, et al. FSuite: exploiting inbreeding in dense SNP chip and exome data. FSuite: exploiting inbreeding in dense SNP chip and exome data. 2014; 30:1940-1. doi: 10.1093/bioinformatics/btu149
- https://doi.org/10.1093/bioinformatics/btu149
- PMID: 24632498
- PMC: -
Download and documentation
Source: https://drive.google.com/file/d/1Y1p8GGaMZGZ4nM89W0abR60DWOdr6dfe/view?usp=sharing
Documentation: https://drive.google.com/file/d/1Y1p8GGaMZGZ4nM89W0abR60DWOdr6dfe/view
Home page: http://genestat.cephb.fr/software/index.php/FSuite
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