Fitchi

Fitchi is a software tool used in population genetics and phylogeography to produce haplotype genealogy graphs based on the Fitch algorithm. The program creates publication-ready graphs where node sizes are proportional to haplotype frequencies and edge lengths represent the minimum number of mutations separating adjacent nodes.

Topic

Statistics and probability;Genetics;Population genetics

Detail

  • Operation: Pathway or network prediction

  • Software interface: Command-line user interface

  • Language: Python

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: michaelmatschiner@mac.com

  • Collection: -

  • Maturity: -

Publications

  • Fitchi: haplotype genealogy graphs based on the Fitch algorithm.
  • Matschiner M. Fitchi: haplotype genealogy graphs based on the Fitch algorithm. Fitchi: haplotype genealogy graphs based on the Fitch algorithm. 2016; 32:1250-2. doi: 10.1093/bioinformatics/btv717
  • https://doi.org/10.1093/bioinformatics/btv717
  • PMID: 26656006
  • PMC: -

Download and documentation

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