FluxModeCalculator

The software tool 'FluxModeCalculator' is a MATLAB-based implementation of the algorithm for elementary flux mode (EFM) analysis, which determines the metabolic capacities and robustness of stoichiometric networks. This implementation is more time and memory efficient than existing tools, enabling large-scale EFM computation on ordinary desktop computers.

Topic

Systems biology;Molecular interactions, pathways and networks

Detail

  • Operation: Pathway or network analysis

  • Software interface: Command-line user interface

  • Language: MATLAB

  • License: GNU General Public License v3.0

  • Cost: Free

  • Version name: -

  • Credit: The Netherlands Consortium for Systems Biology (NCSB), the Center of Medical Systems Biology (CMSB), the European Network for Genetic and Genomic Epidemiology (ENGAGE), the Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) 2.0 and CardioVascular Research Netherlands (CVON-ENERGISE).

  • Input: -

  • Output: -

  • Contact: Jan Bert van Klinken j.b.van_klinken@lumc.nl

  • Collection: -

  • Maturity: -

Publications

  • FluxModeCalculator: an efficient tool for large-scale flux mode computation.
  • van Klinken JB and Willems van Dijk K. FluxModeCalculator: an efficient tool for large-scale flux mode computation. FluxModeCalculator: an efficient tool for large-scale flux mode computation. 2016; 32:1265-6. doi: 10.1093/bioinformatics/btv742
  • https://doi.org/10.1093/bioinformatics/btv742
  • PMID: 26685305
  • PMC: -

Download and documentation

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