FunSiP

The software tool 'FunSiP' is a platform developed for the identification and classification of functional sites in DNA sequences. It uses an ab initio approach for the prediction of functional sites such as splice sites, translation start sites, and stop codons. FunSiP is a general tool that can be applied to various genome annotation problems and extends the previously developed SpliceMachine. It has state-of-the-art performance for donor and acceptor splice site recognition in human and Arabidopsis thaliana genomes.

Topic

Nucleic acid sites, features and motifs

Detail

  • Operation: Sequence analysis

  • Software interface: Command-line user interface;Graphical user interface

  • Language: Java

  • License: GNU General Public License, version 3

  • Cost: Free

  • Version name: -

  • Credit: The Research Foundation-Flanders

  • Input: -

  • Output: -

  • Contact: yves.vandepeer@psb.vib-ugent.be

  • Collection: -

  • Maturity: -

Publications

  • FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA.
  • Van Bel M, et al. FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA. FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA. 2008; 24:1532-3. doi: 10.1093/bioinformatics/btn225
  • https://doi.org/10.1093/bioinformatics/btn225
  • PMID: 18474505
  • PMC: -

Download and documentation

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