GAGE
"Generally Applicable Gene-set Enrichment" (GAGE) is an innovative gene set analysis (GSA) method designed to overcome the limitations of previous GSA approaches, notably their inability to handle datasets of varying sample sizes and experimental designs. Focusing on groups of related genes offers advantages such as increased robustness, sensitivity, and biological relevance compared to individual gene analyses. GAGE builds on these strengths by providing a versatile solution that applies to various gene expression datasets, regardless of their complexity.
Topic
Molecular interactions, pathways and networks;Genetics
Detail
Operation: Pathway or network analysis;Gene-set enrichment analysis
Software interface: Command-line user interface,Library
Language: R
License: GNU General Public License, version 2
Cost: Free with restrictions
Version name: 2.52.0
Credit: The National Institutes of Health.
Input: -
Output: -
Contact: Weijun Luo luo_weijun@yahoo.com
Collection: -
Maturity: Stable
Publications
- GAGE: generally applicable gene set enrichment for pathway analysis.
- Luo W, et al. GAGE: generally applicable gene set enrichment for pathway analysis. GAGE: generally applicable gene set enrichment for pathway analysis. 2009; 10:161. doi: 10.1186/1471-2105-10-161
- https://doi.org/10.1186/1471-2105-10-161
- PMID: 19473525
- PMC: PMC2696452
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/gage_2.52.0.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/gage/man/gage.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/gage.html
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