GAGE

"Generally Applicable Gene-set Enrichment" (GAGE) is an innovative gene set analysis (GSA) method designed to overcome the limitations of previous GSA approaches, notably their inability to handle datasets of varying sample sizes and experimental designs. Focusing on groups of related genes offers advantages such as increased robustness, sensitivity, and biological relevance compared to individual gene analyses. GAGE builds on these strengths by providing a versatile solution that applies to various gene expression datasets, regardless of their complexity.

Topic

Molecular interactions, pathways and networks;Genetics

Detail

  • Operation: Pathway or network analysis;Gene-set enrichment analysis

  • Software interface: Command-line user interface,Library

  • Language: R

  • License: GNU General Public License, version 2

  • Cost: Free with restrictions

  • Version name: 2.52.0

  • Credit: The National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: Weijun Luo luo_weijun@yahoo.com

  • Collection: -

  • Maturity: Stable

Publications

  • GAGE: generally applicable gene set enrichment for pathway analysis.
  • Luo W, et al. GAGE: generally applicable gene set enrichment for pathway analysis. GAGE: generally applicable gene set enrichment for pathway analysis. 2009; 10:161. doi: 10.1186/1471-2105-10-161
  • https://doi.org/10.1186/1471-2105-10-161
  • PMID: 19473525
  • PMC: PMC2696452

Download and documentation


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