GENEASE

GENEASE is a comprehensive and user-friendly web-based bioinformatics tool that aims to address the challenges presented by accumulating omics data generated by high-throughput sequencing technologies. With advances in sequencing technologies, it is now possible to generate large amounts of multi-omics data at an unprecedented rate and scale. However, the accumulation of these omics data far outpaces the rate at which biologists can mine and generate new hypotheses to test experimentally. This has created an urgent need for powerful tools to efficiently and effectively search and filter these resources to address specific post-GWAS functional genomics questions.

GENEASE was developed to provide a one-stop solution for researchers to query and explore multi-omics and phenotype databases in a single web interface. The tool accesses over 50 different public domain databases, including model organism-specific databases, to facilitate gene/variant and disease exploration, enrichment, and overlap analysis in real-time. This makes it easier for researchers to perform downstream functional and overlap analysis for non-coding regulatory variants after genome-wide association studies (GWAS).

One of the key features of GENEASE is its user-friendly point-and-click interface, which makes it easy for researchers to navigate the tool and access the information they need. The interface contains links for support information, including user manuals and examples, which further enhances the usability of the tool.

Topic

Omics;Pathology;Ontology and terminology

Detail

  • Operation: Ontology visualisation

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: The National Institutes of Health (NIH).

  • Input: -

  • Output: -

  • Contact: tesfaye.mersha@cchmc.org

  • Collection: -

  • Maturity: -

Publications

  • GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization.
  • Ghandikota S, et al. GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization. GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization. 2018; 34:3160-3168. doi: 10.1093/bioinformatics/bty182
  • https://doi.org/10.1093/bioinformatics/bty182
  • PMID: 29590301
  • PMC: PMC6137982

Download and documentation


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