GENIE3

An R tool for prediction of gene regulatory networks from RNA-seq data. The GENIE3 algorithm uses the random forest or Extra-Trees approach.

Topic

Systems biology;Molecular interactions, pathways and networks;Gene expression;RNA-seq

Detail

  • Operation: Gene regulatory network prediction

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: GNU General Public License v>=2

  • Cost: Free

  • Version name: 1.6.0

  • Credit: The Research Foundation - Flanders (FWO), Special Research Fund (BOF) KU Leuven, Foundation Against Cancer, Belgium, ERC Consolidator Grant, PDM Postdoctoral Fellowship - the KU Leuven, postdoctoral research fellowships from Kom op Tegen Kanker, F.R.S.-FNRS Belgium, the agency for Innovation by Science and Technology (IWT), Symbiosys and IMEC HI^2 Data Science.

  • Input: -

  • Output: -

  • Contact: Van Anh Huynh-Thu vahuynh@ulg.ac.be

  • Collection: SCENIC

  • Maturity: Stable

Publications

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Download and documentation

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