GGD

Go Get Data (GGD) is a software tool to address the challenges posed by the proliferation of genomic data across various platforms and formats, which complicates data collection, annotation, transformation, and integration tasks. GGD offers a solution through its fast, reproducible approach for installing standardized data recipes, facilitating the integration of diverse genomic datasets and annotations for a broad spectrum of biological research. The tool is designed with flexibility, allowing for extension to other data types beyond genomics, thereby streamlining the complexities commonly encountered in data integration processes.

Topic

Data acquisition;Genomics;Data quality management;Sequencing

Detail

  • Operation: Deposition;Standardisation and normalisation

  • Software interface: Workbench

  • Language: Shell

  • License: MIT License

  • Cost: Free of charge

  • Version name: 1.0.0

  • Credit: The National Center for Advancing Translational Sciences of the National Institutes of Health, the National Institutes of Health (NIH), the Chan Zuckerberg Institute.

  • Input: -

  • Output: -

  • Contact: Aaron R. Quinlan aquinlan@genetics.utah.edu

  • Collection: -

  • Maturity: Stable

Publications

  • Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data.
  • Cormier MJ, et al. Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data. Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data. 2021; 12:2151. doi: 10.1038/s41467-021-22381-z
  • https://doi.org/10.1038/S41467-021-22381-Z
  • PMID: 33846313
  • PMC: PMC8041854

Download and documentation


< Back to DB search