GIBBSTHUR
GIBBSTHUR is a software tool that facilitates the analysis and breeding evaluation of ranking traits in equine populations. It is a task known for its complexity due to the discontinuous nature of competition results and the influence of competitors' performances. The tool adopts the Thurstonian model, which assumes an underlying Gaussian liability for a horse's performance, to address the challenges of evaluating ranking traits. By utilizing Monte Carlo Markov Chain (McMC) techniques and a Gibbs Sampler scheme, including a data-augmentation step for the liability associated with ranking traits, GIBBSTHUR provides a sophisticated approach to analyzing both ranking and other continuous or threshold traits.
The software is capable of estimating variance and covariance components, predicting breeding values, and determining the average performance of competitors in events. Demonstrated through a simple example, GIBBSTHUR has proven its efficacy in accurately recovering simulated variance and covariance components. It also shows a strong correlation between simulated and predicted breeding values and between estimates of event effects and competitors' average additive genetic effect, thereby confirming its utility in generating predictions critical for breeding decisions.
Topic
Genotype and phenotype;Statistics and probability
Detail
Software interface: Command-line interface
Language: Fortran
License: Not stated
Cost: -
Version name: -
Credit: This research received no external funding.
Input: -
Output: -
Contact: Luis Varona lvarona@unizar.es
Collection: -
Maturity: -
Publications
- GIBBSTHUR: Software for Estimating Variance Components and Predicting Breeding Values for Ranking Traits Based on a Thurstonian Model.
- Varona L and Legarra A. GIBBSTHUR: Software for Estimating Variance Components and Predicting Breeding Values for Ranking Traits Based on a Thurstonian Model. GIBBSTHUR: Software for Estimating Variance Components and Predicting Breeding Values for Ranking Traits Based on a Thurstonian Model. 2020; 10:(unknown pages). doi: 10.3390/ani10061001
- https://doi.org/10.3390/ANI10061001
- PMID: 32521773
- PMC: PMC7341208
Download and documentation
Documentation: https://github.com/lvaronaunizar/Gibbsthur/blob/master/Manual_Gibbsthur.pdf
Home page: https://github.com/lvaronaunizar/Gibbsthur
< Back to DB search