GREGOR

GREGOR (Genomic Regulatory Elements and Gwas Overlap algoRithm) is a tool to analyze the correlation between genetic variations and regulatory features, allowing for the discovery of new biological connections to diseases and the identification of functional variants in trait-associated loci.

Topic

GWAS study;Genetics;Epigenomics;Genomics

Detail

  • Operation: Over-representation analysis

  • Software interface: Command-line user interface

  • Language: Perl

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.4.0

  • Credit: The National Science Foundation Open Data IGERT.

  • Input: -

  • Output: -

  • Contact: Cristen J. Willer cristen@umich.edu

  • Collection: -

  • Maturity: -

Publications

  • GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach.
  • Schmidt EM, et al. GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach. GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach. 2015; 31:2601-6. doi: 10.1093/bioinformatics/btv201
  • https://doi.org/10.1093/bioinformatics/btv201
  • PMID: 25886982
  • PMC: PMC4612390

Download and documentation

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