GUIdock
GUIdock-VNC is a container tool that uses a graphical desktop sharing system to provide a browser-based interface for containerized software. It enables the use of Docker for bioinformatics pipelines consisting of components that require a graphical user interface. The tool uses Virtual Network Computing (VNC) protocol to render graphics within commonly used browsers, and a minimal image builder to add the graphical desktop sharing system to any Docker packages. GUIdock-VNC can also use Oauth2 authentication protocols when deployed on the cloud. A proof-of-concept was demonstrated in gene network inference, and benchmarking showed minimal overhead on various operating systems.
Topic
Systems biology;Software engineering
Detail
Operation: Data retrieval
Software interface: Library
Language: Java;Python
License: The MIT licence
Cost: Free
Version name: -
Credit: National Institutes of Health, Microsoft Azure.
Input: -
Output: -
Contact: kayee@uw.edu
Collection: -
Maturity: -
Publications
- GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research.
- Hung LH, et al. GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research. GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research. 2016; 11:e0152686. doi: 10.1371/journal.pone.0152686
- https://doi.org/10.1371/journal.pone.0152686
- PMID: 27045593
- PMC: PMC4821530
Download and documentation
Documentation: https://github.com/WebDataScience/GUIdock#readme
Home page: https://github.com/WebDataScience/GUIdock
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