Galaxy_HiCExplorer

Galaxy HiCExplorer is a web server containing software tools to analyze Hi-C and single-cell Hi-C data to perform quality control and visualization.

Topic

Workflows;DNA;Chromosome conformation capture;ChIP-seq;Epigenetics

Detail

  • Operation: Validation;visualization;standardization and normalizatiom

  • Software interface: Web user interface;Command-line user interface

  • Language: -

  • License: The MIT licence

  • Cost: Free

  • Version name: 19.01

  • Credit: German Science Foundation, German Federal Ministry of Education and Research, the German Research Foundation (DFG).

  • Input: -

  • Output: -

  • Contact: Joachim Wolff wolffj@informatik.uni-freiburg.de, Björn A. Grüning, bjoern.gruening@gmail.com

  • Collection: -

  • Maturity: Mature

Publications

  • Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
  • Wolff J, Rabbani L, Gilsbach R, Richard G, Manke T, Backofen R, Grüning BA. Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 2020 Jul 2;48(W1):W177-W184. doi: 10.1093/nar/gkaa220. PMID: 32301980; PMCID: PMC7319437.
  • https://doi.org/10.1093/nar/gkaa220
  • PMID: 32301980
  • PMC: PMC7319437
  • Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization.
  • Wolff J, Bhardwaj V, Nothjunge S, Richard G, Renschler G, Gilsbach R, Manke T, Backofen R, Ramírez F, Grüning BA. Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 2018 Jul 2;46(W1):W11-W16. doi: 10.1093/nar/gky504. PMID: 29901812; PMCID: PMC6031062.
  • https://doi.org/10.1093/nar/gky504
  • PMID: 29901812
  • PMC: PMC6031062

Download and documentation

< Back to DB search