GeIST

GeIST (Genomic Integration Site Tracker) is a command-line pipeline designed to map integration sites produced by an assay to identify millions of integrations in multiplexed barcoded samples at base-pair resolution. It can identify integrations of murine leukemia virus, adeno-associated virus, Tol2 transposons, or Ac/Ds transposons and can be adapted for other inserted elements.

Topic

DNA;Virology;Sequence analysis

Detail

Operation: Nucleic acid feature detection
Software interface: Command-line user interface
Language: Perl
License: Public Domain
Cost: Free
Version name: 2.1.0
Credit: -
Input: -
Output: -
Contact: https://research.nhgri.nih.gov/software/GeIST/contact.shtml
Collection: -
Maturity: -

Publications

GeIST: a pipeline for mapping integrated DNA elements.
LaFave MC, et al. GeIST: a pipeline for mapping integrated DNA elements. GeIST: a pipeline for mapping integrated DNA elements. 2015; 31:3219-21. doi: 10.1093/bioinformatics/btv350
https://doi.org/10.1093/bioinformatics/btv350
PMID: 26049161
PMC: PMC4592334

Download and documentation

Source: https://github.com/mlafave/GeIST/releases/tag/v2.1.0
Home page: http://research.nhgri.nih.gov/software/GeIST/
Links: https://research.nhgri.nih.gov/software/GeIST/download.shtml
Links: https://github.com/mlafave/GeIST

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