GeneBase

GeneBase 1.1 is a tool that helps parse, structure, and index data from the National Center for Biotechnology Information (NCBI) Gene data bank, and now allows dynamic calculation and summarization of many quantitative parameters associated with genes, gene transcripts, and gene features. It enables unique functionalities not provided by the NCBI Gene itself and can be used for data retrieval, analysis, and testing of biological hypotheses. GeneBase 1.1 provides updated reference sources for human genome studies and data useful for setting parameters for bioinformatic tools.

Topic

Human genetics;Data acquisition;Sequence analysis

Detail

  • Operation: Sequence database search

  • Software interface: Graphical user interface

  • Language: Python

  • License: Apache-2.0

  • Cost: Free

  • Version name: -

  • Credit: Fondazione Umano Progresso, Fondazione Del Monte di Bologna e Ravenna, Bologna, Italy, ‘Gruppo Arzdore’, Dozza, (BO), Italy, the Natali family, Petriolo (MC), Italy, in memory of Leonardo Natali, our Laboratory of Genomics for the study of trisomy 21.

  • Input: -

  • Output: -

  • Contact: mariachiara.pelleri2@unibo.it

  • Collection: -

  • Maturity: -

Publications

  • GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics.
  • Piovesan A, et al. GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics. GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics. 2016; 2016:(unknown pages). doi: 10.1093/database/baw153
  • https://doi.org/10.1093/database/baw153
  • PMID: 28025344
  • PMC: PMC5199132

Download and documentation

    Currently not available or not maintained.

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