GenomicRanges
"GenomicRanges" is a pivotal part of the Bioconductor project, meticulously crafted for efficient representation and computation of annotated genomic ranges. This robust infrastructure seamlessly merges with R's extensive statistical computing capabilities. Together with IRanges and GenomicFeatures, GenomicRanges forms the nucleus of a system that provides comprehensive data structures tailored for genomic research. These structures are adept at handling annotated genomic intervals, specifically supporting transcript structures, read alignments, and coverage vectors, empowering detailed genomic analyses.
The package boasts advanced computational tools with efficient algorithms for critical tasks such as overlap detection, nearest neighbor identification, coverage calculations, and many other range-based operations. These versatile features are indispensable for a broad spectrum of genomic studies, from sequence analysis to differential expression and beyond, giving researchers the power to explore and analyze genomic data quickly.
As a cornerstone of the Bioconductor ecosystem, GenomicRanges plays a pivotal role in supporting the functionality of over 80 other packages. This integration paves the way for a multidisciplinary approach to genomic research, enabling the seamless fusion of genomic data analysis with R's statistical power. This robust platform equips researchers with the tools they need to delve into genomic sequences, decipher biological mechanisms, and propel the field of genomics forward.
Topic
Data management;Sequence analysis
Detail
Operation: Data handling;Sequence annotation
Software interface: Command-line user interface,Library
Language: -
License: Artistic License 2.0
Cost: Free
Version name: 1.54.1
Credit: National Institutes of Health, National Human Genome Research Group, National Heart, Lung and Blood Institute
Input: Nucleic acid features [Textual format]
Output: Sequence range [Textual format]
Contact: Hervé Pagès hpages.on.github@gmail.com
Collection: -
Maturity: Stable
Publications
-
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.54.1.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/GenomicRanges/man/GenomicRanges.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/GenomicRanges.html
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