Gepard

Gepard is a software tool that enables users to quickly create dotplots using suffix arrays to reduce time complexity to Theta(m*log n). It includes a client-server mode that allows users to color dotplots by functional annotation without the need to download sequence or annotation data. Gepard is available for download as source code or executable binaries.

Topic

Comparative genomics

Detail

  • Operation: Dot plot plotting

  • Software interface: Command-line user interface

  • Language: Java;Free of charge;Mature

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: contact.cube@univie.ac.at

  • Collection: -

  • Maturity: -

Publications

  • Gepard: a rapid and sensitive tool for creating dotplots on genome scale.
  • Krumsiek J, et al. Gepard: a rapid and sensitive tool for creating dotplots on genome scale. Gepard: a rapid and sensitive tool for creating dotplots on genome scale. 2007; 23:1026-8. doi: 10.1093/bioinformatics/btm039
  • https://doi.org/10.1093/bioinformatics/btm039
  • PMID: 17309896
  • PMC: -

Download and documentation

    Currently not available or not maintained.

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