GfaPy
GfaPy is written in Python and released under the MIT License. It is available on pip and GitHub, and can be installed using pip: `pip install gfapy` The GfaPy API includes functions for creating and parsing GFA files, editing existing GFA records, and validating the GFA graph. The API also supports custom record types, allowing users to create their own GFA record types. GfaPy also includes a command-line tool for creating, parsing, and editing GFA files. GfaPy is a useful tool for bioinformaticians and developers working with sequence graphs, and provides a simple, straightforward interface for creating and manipulating GFA files.
Topic
Sequencing;Data visualisation;Sequence analysis;Genetic variation;Sequence assembly
Detail
Operation: Sequence visualisation
Software interface: Command-line user interface;Library
Language: Python
License: OpenBSD
Cost: Free
Version name: 1.2.3
Credit: -
Input: -
Output: -
Contact: Giorgio Gonnella gonnella@zbh.uni-hamburg.de
Collection: -
Maturity: Stable
Publications
- GfaPy: a flexible and extensible software library for handling sequence graphs in Python
- Gonnella G, Kurtz S. GfaPy: a flexible and extensible software library for handling sequence graphs in Python. Bioinformatics. 2017 Oct 1;33(19):3094-3095. doi: 10.1093/bioinformatics/btx398. PMID: 28645150.
- https://doi.org/10.1093/bioinformatics/btx398
- PMID: 28645150
- PMC: -
Download and documentation
Source: https://github.com/ggonnella/gfapy/releases/tag/1.2.3
Documentation: https://gfapy.readthedocs.io/en/latest/
Home page: https://github.com/ggonnella/gfapy
Links: https://github.com/GFA-spec/GFA-spec/blob/master/GFA-spec.md
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