GlycoMod

GlycoMod is a tool to predict the compositions of oligosaccharide structures in proteins using experimentally determined masses. The GlycoMod algorithm works for free, derivatized oligosaccharides and glycopeptides. If the protein is in either the SWISS-PROT or TrEMBL database, GlycoMod computes the experimentally determined masses against all the predicted protease-produced peptides.

Topic

Proteomics;Proteomics experiment;Protein modifications;Structure prediction

Detail

  • Operation: Post-translation modification site prediction;Epitope mapping;Ab initio structure prediction;de Novo sequencing

  • Software interface: Web user interface

  • Language: -

  • License: Other

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: catherine.cooper@proteomesystems.com

  • Collection: -

  • Maturity: -

Publications

  • GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data.
  • Cooper CA, Gasteiger E, Packer NH. GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data. Proteomics. 2001 Feb;1(2):340-9. doi: 10.1002/1615-9861(200102)1:2<340::AID-PROT340>3.0.CO;2-B. PMID: 11680880.
  • https://doi.org/10.1002/1615-9861(200102)1:2<340::AID-PROT340>3.0.CO;2-B
  • PMID: 11680880
  • PMC: -
  • Predicting Glycan Composition from Experimental Mass Using GlycoMod
  • Kaushik A, et al. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. 2015; 3:e1332. doi: 10.7717/peerj.1332
  • https://doi.org/keep-2911
  • PMID: -
  • PMC: -

Download and documentation

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