GnpIS

GnpIS is a web-based tool for integrating genetic and genomic data for plants, fungi, and pests. The GnpIS contains (1) Genome annotation, Synteny, (2) Plant genetic resources, BRC collections, (3) Genetic maps and QTL, association genetics, (4) Phenotypic and environmental experiments, (5) Discovery by sequencing and genotyping, (6) Sequencing experiments and analyses, (7) Expression data.

Topic

Omics;Ontology and terminology;Biology

Detail

  • Operation: Indexing;Data handling;Genome visualisation;Query and retrieval;Ontology visualisation

  • Software interface: Web application;Database portal

  • Language: Javascript;C#

  • License: CC BY 4.0

  • Cost: Free

  • Version name: -

  • Credit: INRA Plant Biology and Breeding department, the French National Research Agency, the Genoplante programme, the TransPLANT project (EU 7th Framework Programme.

  • Input: -

  • Output: -

  • Contact: urgi-contact@versailles.inra.fr

  • Collection: -

  • Maturity: -

Publications

  • GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
  • Steinbach D, Alaux M, Amselem J, Choisne N, Durand S, Flores R, Keliet AO, Kimmel E, Lapalu N, Luyten I, Michotey C, Mohellibi N, Pommier C, Reboux S, Valdenaire D, Verdelet D, Quesneville H. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database (Oxford). 2013 Aug 19;2013:bat058.
  • https://doi.org/10.1093/database/bat058
  • PMID: 23959375
  • PMC: PMC3746681

Download and documentation

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