GreenPhylDB

A database designed for comparative and functional genomics based on complete genomes. It contains full genomes of members of the plantae kingdom, ranging from algae to angiosperms, automatically clustered into gene families. Gene families are manually annotated and then analyzed phylogenetically in order to elucidate orthologous and paralogous relationships. The database offers various lists of gene families including plant, phylum and species specific gene families.

Topic

Plant biology;Gene and protein families;Phylogenetics;Zoology;Genomics

Detail

  • Operation: Phylogenetic tree analysis (gene family prediction);Gene prediction;tRNA gene prediction;Gene functional annotation

  • Software interface: Database portal

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  • Credit: CGIAR Generation Challenge Programme (http:--www.generationcp.org) (grant G4008.21). Funding for open access charge: Generation Challenge Programme; National institutes of Health R01 GM087218-01 (to C.M.Z.).

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Publications

  • GreenPhylDB v2.0: comparative and functional genomics in plants.
  • Rouard M, et al. GreenPhylDB v2.0: comparative and functional genomics in plants. GreenPhylDB v2.0: comparative and functional genomics in plants. 2011; 39:D1095-102. doi: 10.1093/nar/gkq811
  • https://doi.org/10.1093/nar/gkq811
  • PMID: 20864446
  • PMC: PMC3013755

Download and documentation

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