HTSvis

HTSvis is a web application that allows users to explore and analyze data from image-based screens and other single to multi-channel measurements. It enables users to upload and visualize data in a generic tabular format and perform quality control and assessment.

Topic

RNA-seq;Compound libraries and screening;Small molecules;Systems biology

Detail

  • Operation: Expression data visualisation;Gene expression analysis

  • Software interface: Web user interface,Library

  • Language: R/Shiny

  • License: GNU General Public License v3.0

  • Cost: Free

  • Version name: v1.2.0

  • Credit: ERC Advanced Grant.

  • Input: Per well aggregated raw and analyzed data of various assay types and scales in a generic tabular format.

  • Output: -

  • Contact: Christian Scheeder c.scheeder@dkfz.de, Michael Boutros m.boutros@dkfz.de, Florain Heigwer f.heigwer@dkfz.de

  • Collection: -

  • Maturity: -

Publications

  • HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens.
  • Scheeder C, et al. HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens. HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens. 2017; 33:2960-2962. doi: 10.1093/bioinformatics/btx319
  • https://doi.org/10.1093/bioinformatics/btx319
  • PMID: 28505270
  • PMC: PMC5870698

Download and documentation

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