HapFlow

HapFlow is a software tool that facilitates the visualization of haplotypes in sequencing data. It is designed to identify variant profiles and create an abstract visual representation of these profiles, which makes it easier to identify haplotypes. This Python application is an efficient way to analyze haplotypes and is useful for researchers and scientists working on genetic studies.

Topic

Genetics;Data visualisation;Genotype and phenotype;Sequence analysis

Detail

  • Operation: Sequence analysis;Variant classification;Visualisation

  • Software interface: Graphical user interface

  • Language: Python

  • License: -

  • Cost: Free

  • Version name: 1.1.2

  • Credit: Australian Research Council Discovery Grant, Queensland Department of Environment and Heritage Protection Koala Research Grant

  • Input: -

  • Output: -

  • Contact: Mitchell J. Sullivan mjsull@gmail.com, Adam Polkinghorne apolking@usc.edu.au

  • Collection: -

  • Maturity: -

Publications

  • HapFlow: visualizing haplotypes in sequencing data.
  • Sullivan MJ, et al. HapFlow: visualizing haplotypes in sequencing data. HapFlow: visualizing haplotypes in sequencing data. 2016; 32:441-3. doi: 10.1093/bioinformatics/btv551
  • https://doi.org/10.1093/bioinformatics/btv551
  • PMID: 26449930
  • PMC: -

Download and documentation

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