HiCBricks

The HiCBricks' software tool is an R/Bioconductor package designed to handle and analyze large, high-resolution Hi-C datasets efficiently. Hi-C, a technique for studying chromatin architecture, generates complex and sizable datasets. 'HiCBricks' provides user-friendly solutions and a framework in R/Bioconductor for building data analysis pipelines and algorithms. The package includes functions for calling domain boundaries and high-quality data visualization. 'HiCBricks' aims to facilitate the analysis of Hi-C data by providing a set of tools within the Bioconductor environment.

Topic

Workflows;Bioinformatics;Sequencing

Detail

  • Operation: Visualisation

  • Software interface: Library

  • Language: R

  • License: The MIT License

  • Cost: Free

  • Version name: 1.21.0

  • Credit: AIRC Start-up grant, AIRC fellowship.

  • Input: -

  • Output: -

  • Contact: Koustav Pal koustav.pal@ifom.eu

  • Collection: -

  • Maturity: Stable

Publications

  • HiCBricks: building blocks for efficient handling of large Hi-C datasets.
  • Pal K, et al. HiCBricks: building blocks for efficient handling of large Hi-C datasets. HiCBricks: building blocks for efficient handling of large Hi-C datasets. 2019; 36:1917-9. doi: 10.1093/bioinformatics/btz808
  • https://doi.org/10.1093/bioinformatics/btz808
  • PMID: 31697323
  • PMC: PMC7703765

Download and documentation

< Back to DB search