IIFDTI
The 'IIFDTI' method is an advanced deep learning-based approach designed for the prediction of drug-target interactions (DTIs), a crucial aspect of drug discovery and design. This method leverages independent features of drug-target pairs and their interactive features within substructures to enhance the accuracy of DTI predictions.
Key features of IIFDTI include:
1. Extraction of interactive features between drugs and targets using a bidirectional encoder-decoder architecture.
2. Extraction of independent features of drugs and targets through graph neural networks and convolutional neural networks, respectively.
3. Fusion of all extracted features and their input into fully connected dense layers for DTI predictions.
IIFDTI is designed to consider the independent features of drugs and targets while simulating the interactive features of substructures from a biological perspective. Through various experiments, IIFDTI demonstrates superior performance compared to state-of-the-art methods when evaluated using benchmark datasets. Additionally, mapped visualizations of attention weights showcase its ability to capture biological insights, and case studies highlight its practical applications.
Topic
Small molecules;Drug discovery;Machine learning
Detail
Operation: Small molecule design;Feature extraction;Transmembrane protein prediction
Software interface: Command-line user interface
Language: Python
License: Not stated
Cost: Free
Version name: -
Credit: The National Key Research and Development Program of China, the NSFC-Zhejiang Joint Fund for the Integration of Industrialization and Informatization, the National Natural Science Foundation of China, Hunan Provincial Science and Technology Program.
Input: -
Output: -
Contact: Jianxin Wang jxwang@mail.csu.edu.cn
Collection: -
Maturity: -
Publications
- IIFDTI: predicting drug-target interactions through interactive and independent features based on attention mechanism.
- Cheng Z, et al. IIFDTI: predicting drug-target interactions through interactive and independent features based on attention mechanism. IIFDTI: predicting drug-target interactions through interactive and independent features based on attention mechanism. 2022; 38:4153-4161. doi: 10.1093/bioinformatics/btac485
- https://doi.org/10.1093/BIOINFORMATICS/BTAC485
- PMID: 35801934
- PMC: -
Download and documentation
Source: https://github.com/czjczj/IIFDTI
Documentation: https://github.com/czjczj/IIFDTI/blob/master/README.md
Home page: https://github.com/czjczj/IIFDTI
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