IMMAN

IMMAN is a software tool for reconstructing Interolog Protein Networks (IPN) by integrating multiple Protein-Protein Interaction Networks (PPIN). It enables users to unify diverse PPINs to identify conserved networks across different species. IMMAN facilitates the retrieval of IPNs with varying degrees of conservation, supporting protein function prediction analysis based on these integrated protein networks.

Topic

Proteomics;Sequence analysis;Sequencing;Systems biology

Detail

  • Operation: Pathway or network analysis

  • Software interface: Library

  • Language: R

  • License: Artistic License 2.0

  • Cost: Free

  • Version name: 1.22.0

  • Credit: The school of biological sciences, Institute for Research in Fundamental Sciences, Tehran, Iran.

  • Input: -

  • Output: -

  • Contact: Minoo Ashtiani ashtiani.minoo@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, Mapping and Mining ANalysis
  • Ashtiani M, Nickchi P, Jahangiri-Tazehkand S, Safari A, Mirzaie M, Jafari M. IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis. BMC Bioinformatics. 2019 Feb 12;20(1):73. doi: 10.1186/s12859-019-2659-y. PMID: 30755155; PMCID: PMC6373071.
  • https://doi.org/10.1186/s12859-019-2659-y
  • PMID: 30755155
  • PMC: PMC6373071

Download and documentation

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