ISEScan

ISEScan is a software tool that uses profile hidden Markov models built from hand-selected IS elements to detect IS elements in prokaryotic genomes with greater accuracy than other annotation systems.

Topic

Genomics;DNA structural variation;Sequence analysis;Genetic variation

Detail

  • Operation: Structural variation detection

  • Software interface: Command-line user interface

  • Language: Python

  • License: Apache-2.0 license

  • Cost: Free

  • Version name: 1.7.2.3

  • Credit: The National Science Foundation, Lilly Endowment, Inc., through its support for the Indiana University Pervasive Technology Institute, the Indiana METACyt Initiative.

  • Input: -

  • Output: -

  • Contact: Zhiqun Xie xiezhq@hotmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.
  • Xie Z and Tang H. ISEScan: automated identification of insertion sequence elements in prokaryotic genomes. ISEScan: automated identification of insertion sequence elements in prokaryotic genomes. 2017; 33:3340-3347. doi: 10.1093/bioinformatics/btx433
  • https://doi.org/10.1093/bioinformatics/btx433
  • PMID: 29077810
  • PMC: -

Download and documentation

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