InterMineR

InterMineR is an R package that provides a client interface to InterMine, a powerful open-source data warehouse system for integrating and analyzing complex biological data. The package allows users to access and manipulate data from InterMine databases directly within the R environment.

With InterMineR, users can construct queries, retrieve data, and analyze the integrated biological data stored in InterMine databases. The package supports various data types and provides a flexible query builder for creating custom searches. It also offers functionality for searching genomic regions and includes a library of pre-built widgets for standard statistical analyses.

Topic

RNA splicing;Comparative genomics;Functional genomics;Function analysis;Gene expression;Gene regulation;GWAS study;Microarray experiment;Proteomics;DNA polymorphism;Systems biology

Detail

  • Operation: Differential gene expression analysis

  • Software interface: Library

  • Language: R

  • License: GNU Lesser General Public License v2.0

  • Cost: Free

  • Version name: 1.26.0

  • Credit: The Wellcome Trust, the National Human Genome Research Institute.

  • Input: -

  • Output: -

  • Contact: InterMine Team r.lyne@gen.cam.ac.uk

  • Collection: -

  • Maturity: Stable

Publications

  • InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
  • Smith RN, et al. InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. 2012; 28:3163-5. doi: 10.1093/bioinformatics/bts577
  • https://doi.org/10.1093/bioinformatics/bts577
  • PMID: 23023984
  • PMC: PMC3516146

Download and documentation

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