InteractionSet
InteractionSet is a package in the Bioconductor project that provides infrastructure for representing and manipulating genomic interaction data, which is crucial for analyzing large datasets from techniques like Hi-C. It offers classes for genomic interactions, experimental data, and essential processing methods, simplifying development and enhancing interoperability for new analysis tools.
Topic
Genomics
Detail
Operation: Sequence analysis
Software interface: Command-line user interface,Library
Language: R
License: The GNU General Public License v3.0
Cost: Free
Version name: 1.30.0
Credit: Cancer Research UK, Medical Research Council.
Input: -
Output: -
Contact: Aaron Lun infinite.monkeys.with.keyboards@gmail.com
Collection: -
Maturity: Stable
Publications
- Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments.
- Lun AT, et al. Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments. Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments. 2016; 5:950. doi: 10.12688/f1000research.8759.2
- https://doi.org/10.12688/f1000research.8759.2
- PMID: 27303634
- PMC: PMC4890298
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/InteractionSet_1.30.0.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/InteractionSet/man/InteractionSet.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/InteractionSet.html
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