InteractiveComplexHeatmap
The 'InteractiveComplexHeatmap' is an R package to enhance the interactivity of heatmaps created using the 'ComplexHeatmap' package. While 'ComplexHeatmap' is powerful for constructing customizable static heatmaps, 'InteractiveComplexHeatmap' adds the capability of creating interactive Shiny web applications directly from static complex heatmaps. This integration introduces tools for interactive exploration, enabling users to select subsets of rows and columns, search heatmaps using labels, and manipulate multiple heatmaps simultaneously. Moreover, the package supports the export of static heatmaps from other popular heatmap functions, such as heatmap.2() or pheatmap(), to interactive applications.
Topic
Imaging;Sequencing
Detail
Operation: Heat map generation;Scatter plot plotting;Sequence visualisation
Software interface: Library
Language: R
License: The MIT License
Cost: Free
Version name: 1.10.0
Credit: The NCT Molecular Precision Oncology Program.
Input: -
Output: -
Contact: Zuguang Gu z.gu@dkfz.de
Collection: -
Maturity: Stable
Publications
- Make Interactive Complex Heatmaps in R
- Gu Z, Hübschmann D. Make Interactive Complex Heatmaps in R. Bioinformatics. 2022 Feb 7;38(5):1460-1462. doi: 10.1093/bioinformatics/btab806. PMID: 34864868; PMCID: PMC8826183.
- https://doi.org/10.1101/2021.03.08.434289
- PMID: 34864868
- PMC: PMC8826183
Download and documentation
Source: https://bioconductor.org/packages/src/contrib/InteractiveComplexHeatmap_1.10.0.tar.gz
Documentation: https://bioconductor.org/packages/manuals/InteractiveComplexHeatmap/man/InteractiveComplexHeatmap.pdf
Home page: https://bioconductor.org/packages/InteractiveComplexHeatmap/
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