JIGSAW

JIGSAW is a software tool to predict eukaryotic gene models using the output from gene finders, splice site prediction programs, and sequence alignments.

Topic

Genomics

Detail

  • Operation: Gene prediction

  • Software interface: Command-line user interface

  • Language: C++

  • License: The Artistic License 2.0

  • Cost: Free

  • Version name: -

  • Credit: The National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: J.E. Allen jeallen@umiacs.umd.edu

  • Collection: -

  • Maturity: Stable

Publications

  • JIGSAW: integration of multiple sources of evidence for gene prediction.
  • Allen JE, Salzberg SL. JIGSAW: integration of multiple sources of evidence for gene prediction. Bioinformatics. 2005 Sep 15;21(18):3596-603. doi: 10.1093/bioinformatics/bti609. Epub 2005 Aug 2. PMID: 16076884.
  • https://doi.org/10.1093/bioinformatics/bti609
  • PMID: 16076884
  • PMC: -
  • Computational gene prediction using multiple sources of evidence
  • Allen JE, Pertea M, Salzberg SL. Computational gene prediction using multiple sources of evidence. Genome Res. 2004 Jan;14(1):142-8. doi: 10.1101/gr.1562804. PMID: 14707176; PMCID: PMC314291.
  • https://doi.org/10.1101/gr.1562804
  • PMID: 14707176
  • PMC: PMC314291
  • JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions.
  • Allen JE, Majoros WH, Pertea M, Salzberg SL. JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions. Genome Biol. 2006;7 Suppl 1(Suppl 1):S9.1-13. doi: 10.1186/gb-2006-7-s1-s9. Epub 2006 Aug 7. PMID: 16925843; PMCID: PMC1810558.
  • https://doi.org/10.1186/gb-2006-7-s1-s9
  • PMID: 16925843
  • PMC: PMC1810558

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