Kablammo
Kablammo is a software tool designed to produce interactive, vector-based visualizations of sequence alignments generated by BLAST. The tool is particularly useful for users who want to analyze and interpret complex genomic data, including shared protein domains, chromosome structural modifications, and genome misassembly. The software provides a comprehensive set of visualization options that help users to better understand their data and identify key patterns and relationships.
One of the key benefits of Kablammo is its web-based interface, which makes it easy for users to access the tool from anywhere with an internet connection. This is particularly useful for researchers who need to collaborate with colleagues in other locations or who want to share their data with a wider audience. Additionally, Kablammo is available for local installation, which provides users with greater flexibility and control over their data.
The source code and instructions for the local installation of Kablammo are available under the MIT license, allowing users to customize the tool to their specific needs and integrate it with other software packages as necessary.
Topic
Sequence analysis;Sequence assembly;Data visualisation
Detail
Operation: Sequence assembly visualisation
Software interface: Command-line user interface
Language: Javascript;Shell;Python
License: MIT license
Cost: Free
Version name: -
Credit: Alberta Innovates Health Solutions (AIHS) studentship, the Natural Sciences and Engineering Research Council of Canada (NSERC) Collaborative Research and Training Experience (CREATE) program in Host-Parasite Interactions.
Input: -
Output: -
Contact: James Wasmuth jwasmuth@ucalgary.ca
Collection: -
Maturity: -
Publications
- Kablammo: an interactive, web-based BLAST results visualizer.
- Wintersinger JA and Wasmuth JD. Kablammo: an interactive, web-based BLAST results visualizer. Kablammo: an interactive, web-based BLAST results visualizer. 2015; 31:1305-6. doi: 10.1093/bioinformatics/btu808
- https://doi.org/10.1093/bioinformatics/btu808
- PMID: 25481007
- PMC: -
Download and documentation
Documentation: http://kablammo.wasmuthlab.org/#help
Home page: http://kablammo.wasmuthlab.org/
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