Kvik
Kvik is an open-source framework designed for exploratory analysis of functional genomics data from large epidemiological studies. Kvik Pathways is an application built using Kvik, which facilitates the exploration of gene expression data in the context of biological pathways. The application uses a three-tier architecture for statistical analyses and metadata retrieval, and has been used to analyze data from both a cross-sectional study and a case-control study within the Norwegian Women and Cancer cohort. The Kvik Pathways application was specifically used to explore gene expression data in healthy women with high and low plasma ratios of essential fatty acids.
Topic
Molecular interactions, pathways and networks;Systems biology
Detail
Operation: Sequence analysis;Expression profile pathway mapping
Software interface: Web user interface
Language: R
License: The MIT licence
Cost: Free
Version name: v1.0
Credit: European Research Council, under the title “Transcriptomics in cancer epidemiology - TICE”.
Input: -
Output: -
Contact: bjorn.fjukstad@uit.no
Collection: -
Maturity: -
Publications
- Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies.
- Fjukstad B, et al. Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies. Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies. 2015; 4:81. doi: 10.12688/f1000research.6238.2
- https://doi.org/10.12688/f1000research.6238.2
- PMID: 26425340
- PMC: PMC4574765
Download and documentation
Documentation: https://github.com/fjukstad/kvik/blob/master/README.md
Home page: https://github.com/fjukstad/kvik
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