LDlink

A suite of web applications to assess haplotype structures and linkage of funtional variants.

Topic

Genetics, Population genetics, Whole genome sequencing

Detail

  • Operation: Linkage disequilibrium calculation

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: 3.5

  • Credit: Machiela MJ, Chanock SJ.

  • Input: -

  • Output: -

  • Contact: NCILDlinkWebAdmin at mail.nih.gov

  • Collection: -

  • Maturity: Stable

Publications

  • LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants.
  • Machiela MJ and Chanock SJ. LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants. LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants. 2015; 31:3555-7. doi: 10.1093/bioinformatics/btv402
  • https://doi.org/10.1093/bioinformatics/btv402
  • PMID: 26139635
  • PMC: PMC4626747
  • LDassoc: an online tool for interactively exploring genome-wide association study results and prioritizing variants for functional investigation.
  • Machiela MJ and Chanock SJ. LDassoc: an online tool for interactively exploring genome-wide association study results and prioritizing variants for functional investigation. LDassoc: an online tool for interactively exploring genome-wide association study results and prioritizing variants for functional investigation. 2018; 34:887-889. doi: 10.1093/bioinformatics/btx561
  • https://doi.org/10.1093/bioinformatics/btx561
  • PMID: 28968746
  • PMC: PMC6030966

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