LOX

LOX is a software tool that estimates gene expression levels from high-throughput-expressed sequence datasets with multiple treatments or samples. It incorporates a gene bias model to integrate diverse transcriptomic sequencing data, and provides expression levels for each gene relative to all treatments as well as Bayesian credible intervals.

Topic

Gene expression;Sequencing

Detail

  • Operation: Gene expression analysis

  • Software interface: Command-line user interface

  • Language: R

  • License: GNU General Public License

  • Cost: Free

  • Version name: 1.8beta

  • Credit: National Institute of General Medical Sciences, National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: Zhang Zhang at zhangzhang@big.ac.cn or zhangzhang.cn@gmail.com

  • Collection: -

  • Maturity: -

Publications

  • LOX: inferring Level Of eXpression from diverse methods of census sequencing.
  • Zhang Z, et al. LOX: inferring Level Of eXpression from diverse methods of census sequencing. LOX: inferring Level Of eXpression from diverse methods of census sequencing. 2010; 26:1918-9. doi: 10.1093/bioinformatics/btq303
  • https://doi.org/10.1093/bioinformatics/btq303
  • PMID: 20538728
  • PMC: PMC2905554

Download and documentation

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