LS-SNP

LS-SNP/PDB is a web-based resource that provides genome-wide annotation of human non-synonymous SNPs. It features high-quality protein graphics with molecular visualization software and annotates biologically relevant features. The system is kept up-to-date through an automated, high-throughput build pipeline that maps human nsSNPs onto Protein Data Bank structures. LS-SNP/PDB is available through multiple links and pages, including the UCSC Genome Browser Gene and SNP Details pages, and the PharmGKB Gene Variants Downloads/Cross-References pages.

Topic

DNA polymorphism;Genetics;Genomics

Detail

  • Operation: Genome annotation;SNP annotation

  • Software interface: Web user interface

  • Language: Java;Python

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: lssnp@lists.johnshopkins.edu

  • Collection: -

  • Maturity: -

Publications

  • LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures.
  • Ryan M, et al. LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. 2009; 25:1431-2. doi: 10.1093/bioinformatics/btp242
  • https://doi.org/10.1093/bioinformatics/btp242
  • PMID: 19369493
  • PMC: PMC6276889

Download and documentation

    Currently not available or not maintained.


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