Lncident
Lncident is a software tool to identify long non-coding RNAs (lncRNAs). The Lncident algorithm uses a support vector machine (SVM) with sequence composition features and open reading frame information.
Topic
Functional, regulatory and non-coding RNA
Detail
Operation: Sequence analysis
Software interface: Command-line user interface
Language: R
License: GNU General Public License v3
Cost: Free
Version name: 1.3.3
Credit: The National Natural Science Foundation of China, the Science-Technology Development Project from Jilin Province, China Postdoctoral Science Foundation.
Input: FASTA
Output: -
Contact: Ying Li liying@jlu.edu.cn, Wei Du weidu@jlu.edu.cn
Collection: -
Maturity: -
Publications
- Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination
- Han S, Liang Y, Li Y, Du W. Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination. Biomed Res Int. 2016;2016:8496165. doi: 10.1155/2016/8496165. Epub 2016 Nov 29. PMID: 28042575; PMCID: PMC5153550.
- https://doi.org/10.1155/2016/8496165
- PMID: 28042575
- PMC: PMC5153550
- Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information.
- Han S, Liang Y, Li Y, Du W. Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information. Int J Genomics. 2016;2016:9185496. doi: 10.1155/2016/9185496. Epub 2016 Dec 27. PMID: 28116287; PMCID: PMC5223071.
- https://doi.org/10.1155/2016/9185496
- PMID: 28116287
- PMC: PMC5223071
Download and documentation
Source: http://csbl.bmb.uga.edu/mirrors/JLU/Lncident/Lncident_1.3.3.tar.gz
Documentation: https://github.com/HAN-Siyu/Lncident/blob/master/Lncident-manual.pdf
Home page: http://csbl.bmb.uga.edu/mirrors/JLU/Lncident/index.php
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