MASQOT-GUI

MASQOT-GUI is a platform-independent software pipeline for two-channel microarray spot quality control, which includes gridding, segmentation, quantification, quality assessment, and data visualization. It provides a set of independent applications with interactions between the tools, as well as import and export support for external software. One of its unique features is the implementation of automated multivariate quality control assessment, based on the previously documented MASQOT methodology.

Topic

Microarray experiment;Data quality management;Data visualisation

Detail

  • Operation: Expression data visualisation;Sequencing quality control

  • Software interface: Graphical user interface

  • Language: Java

  • License: GNU Lesser General Public License v3.0

  • Cost: Free

  • Version name: 1.0.1

  • Credit: Swedish SSF, the Wallenberg Foundation, the European Commission, the Swedish VR, EU-strategic funding and the Functional Genomics Initiative at SLU.

  • Input: -

  • Output: -

  • Contact: Max Bylesjö max.bylesjo@chem.umu.se

  • Collection: -

  • Maturity: Stable

Publications

  • MASQOT-GUI: spot quality assessment for the two-channel microarray platform.
  • Bylesjö M, et al. MASQOT-GUI: spot quality assessment for the two-channel microarray platform. MASQOT-GUI: spot quality assessment for the two-channel microarray platform. 2006; 22:2554-5. doi: 10.1093/bioinformatics/btl434
  • https://doi.org/10.1093/bioinformatics/btl434
  • PMID: 16899490
  • PMC: -

Download and documentation

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