MASiVE

MASiVE is a software tool that can accurately identify, analyze, and estimate the age of complete Sirevirus LTR-retrotransposons in plant genome sequences, even when working on a large scale.

Topic

Sequence analysis;Plant biology;Mapping;DNA

Detail

  • Operation: Mapping;Analysis

  • Software interface: Command-line user interface, we user interface

  • Language: Perl

  • License: -

  • Cost: Free

  • Version name: 05.07.16

  • Credit: FP6 Biosapiens Network of Excellence

  • Input: FASTA

  • Output: -

  • Contact: N. Darzentas ndarz@certh.gr

  • Collection: -

  • Maturity: -

Publications

  • MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences.
  • Darzentas N, et al. MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences. MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences. 2010; 26:2452-4. doi: 10.1093/bioinformatics/btq454
  • https://doi.org/10.1093/bioinformatics/btq454
  • PMID: 20696734
  • PMC: -

Download and documentation

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