MEMBPLUGIN

MEMBPLUGIN is a plugin for the Visual Molecular Dynamics package, designed to analyze molecular dynamics (MD) simulations of complex membrane or membrane-protein systems. The plugin provides algorithms to measure a range of essential biophysical properties in simulated membranes, including protein-lipid interactions and dynamics. The plugin offers both a user-friendly graphical interface and command-line procedures to be used in analysis scripts.

Topic

Biophysics;Structural biology

Detail

  • Operation: Transmembrane protein visualisation;Molecular dynamics

  • Software interface: Command-line user interface;Graphical user interface

  • Language: tcl

  • License: GNU General Public License, version 3

  • Cost: Free

  • Version name: 1.1

  • Credit: Fundació La Marató de TV3/Instituto de Salud Carlos III FEDER, Alianza 4U program. CNR’s short-term mobility (STM 2013) program.

  • Input: -

  • Output: -

  • Contact: Jana Selent jana.selent@upf.edu, Toni Giorgino toni.giorgino@isib.cnr.it

  • Collection: -

  • Maturity: -

Publications

  • MEMBPLUGIN: studying membrane complexity in VMD.
  • Guixà-González R, et al. MEMBPLUGIN: studying membrane complexity in VMD. MEMBPLUGIN: studying membrane complexity in VMD. 2014; 30:1478-80. doi: 10.1093/bioinformatics/btu037
  • https://doi.org/10.1093/bioinformatics/btu037
  • PMID: 24451625
  • PMC: -

Download and documentation

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