MRHMMs

MRHMMs is a software package that offers a range of Hidden Markov Models (HMMs) suitable for biological studies and other fields. The software allows for flexible application of HMMs, including diverse emission probability structures such as mixtures of multivariate normal distributions and regression models. MRHMMs is designed to be computationally efficient for analyzing large data sets, making it suitable for genome-wide studies.

Topic

Sequence sites, features and motifs;Statistics and probability

Detail

  • Operation: Regression analysis

  • Software interface: Command-line user interface

  • Language: R

  • License: Not stated

  • Cost: Free

  • Version name: -

  • Credit: The National Center for Research Resources and the National Center for Advancing Translational Sciences, National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: yuzhang@stat.psu.edu;ghoshd@psu.edu

  • Collection: -

  • Maturity: -

Publications

  • MRHMMs: multivariate regression hidden Markov models and the variantS.
  • Lee Y, et al. MRHMMs: multivariate regression hidden Markov models and the variantS. MRHMMs: multivariate regression hidden Markov models and the variantS. 2014; 30:1755-6. doi: 10.1093/bioinformatics/btu070
  • https://doi.org/10.1093/bioinformatics/btu070
  • PMID: 24558116
  • PMC: PMC4058941

Download and documentation

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