MSACompro

MSACompro is a tool to integrate tool predicted secondary structure, residue contact information, and relative solvent accessibility into a posterior probability for multiple sequence alignment (MSA) software, such as MSAProbs, ProbCons, Probalign, T-coffee, MAFFT, and MUSCLE.

Topic

Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs

Detail

  • Operation: Multiple sequence alignment;protein structure prediction

  • Software interface: Command-line user interface

  • Language: Perl;C++

  • License: Other

  • Cost: Free for non-commercial usage.

  • Version name: 1.2.0

  • Credit: NIH R01 grant (no. 1R01GM093123)

  • Input: -

  • Output: -

  • Contact: Jianlin Cheng chengji@missouri.edu

  • Collection: -

  • Maturity: Stable

Publications

  • MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts.
  • Deng X and Cheng J. MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts. MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts. 2011; 12:472. doi: 10.1186/1471-2105-12-472
  • https://doi.org/10.1186/1471-2105-12-472
  • PMID: 22168237
  • PMC: -

Download and documentation

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