MSARC

MSARC a multiple sequence alignment (MSA) tool that constructs alignments without guide trees. The Authors claim their method to outperform BAliBASE on "sequence sets whose evolutionary distances are difficult to represent by a phylogenetic tree."

Topic

Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs OPERATION=Multiple sequence alignment

Detail

  • Operation: Multiple sequence alignment

  • Software interface: Command-line user interface

  • Language: Python

  • License: -

  • Cost: Free

  • Version name: 1.2

  • Credit: Polish Ministry of Science and Higher Education [N N519 652740].

  • Input: FASTA

  • Output: MSF

  • Contact: dojer@mimuw.edu.pl

  • Collection: -

  • Maturity: MATURITY=Stable

Publications

  • MSARC: Multiple sequence alignment by residue clustering.
  • Modzelewski M and Dojer N. MSARC: Multiple sequence alignment by residue clustering. MSARC: Multiple sequence alignment by residue clustering. 2014; 9:12. doi: 10.1186/1748-7188-9-12
  • https://doi.org/10.1186/1748-7188-9-12
  • PMID: 24735785
  • PMC: -

Download and documentation

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