MSAcquisitionSimulator

MSAcquisitionSimulator is a software tool developed for simulating ground truth LC-MS data and applying custom data-dependent acquisition (DDA) algorithms. It allows researchers to test, refine, and evaluate novel DDA algorithms before implementing them on a mass spectrometer.

Topic

Proteomics;Proteomics experiment;Simulation experiment

Detail

  • Operation: Modelling and simulation

  • Software interface: Command-line user interface

  • Language: C++

  • License: MIT License

  • Cost: Free

  • Version name: v1.0.2

  • Credit: The National Cancer Institute.

  • Input: -

  • Output: -

  • Contact: weiwang@cs.ucla.edu;ben_major@med.unc.edu

  • Collection: -

  • Maturity: -

Publications

  • MSAcquisitionSimulator: data-dependent acquisition simulator for LC-MS shotgun proteomics.
  • Goldfarb D, et al. MSAcquisitionSimulator: data-dependent acquisition simulator for LC-MS shotgun proteomics. MSAcquisitionSimulator: data-dependent acquisition simulator for LC-MS shotgun proteomics. 2016; 32:1269-71. doi: 10.1093/bioinformatics/btv745
  • https://doi.org/10.1093/bioinformatics/btv745
  • PMID: 26685308
  • PMC: PMC4894284

Download and documentation

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