MSnbase

"MSnbase" is an R package designed to analyze quantitative proteomics experiments utilizing isobaric tagging. The software is an exploratory data analysis framework for reproducible research, offering functionalities such as raw data import, quality control, visualization, data processing, and quantitation. MSnbase allows seamless integration of quantitative proteomics data with additional statistical analysis tools provided by the Bioconductor project.

Topic

Proteomics;Proteomics experiment;Data management;Data visualisation

Detail

  • Operation: Data handling;Visualisation

  • Software interface: Command-line user interface,Library

  • Language: R

  • License: Artistic License 2.0

  • Cost: Free

  • Version name: 2.28.1

  • Credit: BBSRC Tools and Resources Development Fund, European Union 7th Framework Program.

  • Input: -

  • Output: -

  • Contact: Laurent Gatto laurent.gatto@uclouvain.be

  • Collection: -

  • Maturity: Stable

Publications

  • MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation.
  • Gatto L and Lilley KS. MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. 2012; 28:288-9. doi: 10.1093/bioinformatics/btr645
  • https://doi.org/10.1093/bioinformatics/btr645
  • PMID: 22113085
  • PMC: -

Download and documentation

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