MSpC

Morpheus Spectral Counter (MSpC) is a tool for the calculation of normalized spectral abundance factor (NSAF) values from the output from Morpheus (see links), peptide-MS/MS matching tool.

Topic

Proteomics experiment;Proteomics;Protein structure analysis

Detail

  • Operation: Spectrum calculation

  • Software interface: Command-line user interface

  • Language: C#

  • License: The MIT License

  • Cost: Free

  • Version name: 1.2.1

  • Credit: The U.S. Department of Energy Office of Science, Office of Basic Energy Sciences, Chemical Sciences, Geosciences, and Biosciences Division, National Institutes of Health (NIH), National Institute of General Medical Sciences.

  • Input: -

  • Output: -

  • Contact: rdvierstra@wustl.edu

  • Collection: -

  • Maturity: Stable

Publications

  • Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine.
  • Gemperline DC, et al. Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine. Morpheus Spectral Counter: A computational tool for label-free quantitative mass spectrometry using the Morpheus search engine. 2016; 16:920-4. doi: 10.1002/pmic.201500420
  • https://doi.org/10.1002/pmic.201500420
  • PMID: 26791624
  • PMC: PMC5089804
  • Using combined evidence from replicates to evaluate ChIP-seq peaks.
  • Jalili V, et al. Using combined evidence from replicates to evaluate ChIP-seq peaks. Using combined evidence from replicates to evaluate ChIP-seq peaks. 2015; 31:2761-9. doi: 10.1093/bioinformatics/btv293
  • https://doi.org/10.1093/bioinformatics/btv293
  • PMID: 25957351
  • PMC: -

Download and documentation

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