MVIAm

MVIAm (Multi-View based Integrative Analysis of microarray data for identifying biomarkers) is a software tool that addresses the challenges of analyzing gene expression data from microarray technology. These challenges include high noise, small sample size with high dimensionality, batch effects, and low reproducibility of significant biomarkers.

The key features of MVIAm are:

1. Integration of multiple gene expression datasets: MVIAm applies cross-platform normalization methods to aggregate various datasets into a multi-view dataset, enabling a more comprehensive analysis of biological systems.

2. Robust learning mechanism: The tool utilizes Multi-View Self-Paced Learning (MVSPL) for gene selection in cancer classification problems, enhancing the results' reliability.

3. Identification of significant biomarkers: MVIAm aims to identify more reproducible and biologically relevant biomarkers by leveraging the integrated multi-view dataset and the robust learning approach.

4. Flexibility and effectiveness: The tool can be applied flexibly to various gene expression datasets and has demonstrated its efficacy in breast and lung cancer studies.

Topic

Microarray experiment;Biomarkers;Statistics and probability

Detail

  • Operation: Aggregation;Expression analysis

  • Software interface: Command-line interface

  • Language: R

  • License: Not stated

  • Cost: Free of charge

  • Version name: -

  • Credit: The Chinese Ministry of Education's Tian Cheng Hui Zhi Innovation and Education Improvement Funds, the Macau Science and Technology Develop Funds of Macao SAR of China, and China NSFC project.

  • Input: -

  • Output: -

  • Contact: Yong Liang yliang@must.edu.mo

  • Collection: -

  • Maturity: -

Publications

  • Multi-view based integrative analysis of gene expression data for identifying biomarkers.
  • Yang ZY, et al. Multi-view based integrative analysis of gene expression data for identifying biomarkers. Multi-view based integrative analysis of gene expression data for identifying biomarkers. 2019; 9:13504. doi: 10.1038/s41598-019-49967-4
  • https://doi.org/10.1038/S41598-019-49967-4
  • PMID: 31534156
  • PMC: PMC6751173

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