MaGelLAn

MaGelLAn (Maternal Genealogy Lineage Analyser) is a pedigree data analysis and processing software tool for maternal lineage and mitochondrial DNA. The MaGelLAn algorithm has functions for sampling strategy optimization, identification, correcting inconsistencies in pedigrees, identifying maternal lineages, assigning mitochondrial sequences to each individual within a pedigree, quantitative genetics association analyses, computation of effective populations sizes, and assignment of mitochondrial genome probabilities.

The documentation is in the software package.

Topic

Population genetics;Sequence analysis

Detail

  • Operation: Sequence analysis

  • Software interface: Command-line user interface

  • Language: Python

  • License: Other

  • Cost: Free

  • Version name: 1.0

  • Credit: Croatian Science Foundation, “Utilisation of the whole mitogenome in cattle breeding and conservation genetics”.

  • Input: -

  • Output: -

  • Contact: Strahil Ristov ristov@irb.hr

  • Collection: -

  • Maturity: -

Publications

  • MaGelLAn 1.0: a software to facilitate quantitative and population genetic analysis of maternal inheritance by combination of molecular and pedigree information.
  • Ristov S, Brajkovic V, Cubric-Curik V, Michieli I, Curik I. MaGelLAn 1.0: a software to facilitate quantitative and population genetic analysis of maternal inheritance by combination of molecular and pedigree information. Genet Sel Evol. 2016 Sep 10;48(1):65. doi: 10.1186/s12711-016-0242-9. PMID: 27613390; PMCID: PMC5018160.
  • https://doi.org/10.1186/s12711-016-0242-9
  • PMID: 27613390
  • PMC: PMC5018160

Download and documentation

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